|
| Status |
Public on Oct 21, 2013 |
| Title |
Royan_C17_PD |
| Sample type |
RNA |
| |
|
| Source name |
Royan C17 mESC line cultured in PD condition
|
| Organism |
Mus musculus |
| Characteristics |
culture condition: PD
cell line: Royan_B4
strain: BALB/c
cell type: Embryonic Stem Cell (ESC)
|
| Treatment protocol |
mESC lines, Royan B20 and Royan B18, were passaged simultaneously in N2B27 medium supplemented with PD+LIFor SB+LIF or 2i (PD+CHIR99021)+LIF for 10 passages.
|
| Growth protocol |
mESC lines, Royan B20 and Royan B18, were generated from C57BL/6 mouse strains blastocysts in N2B27 medium supplemented with PD0325901 (PD)+SB431542 (SB)+LIF and mainteined as the same for more than 10 passages
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Mini Kit
|
| Label |
Biotin
|
| Label protocol |
Illumina TotalPrep RNA Amplification kit (Ambion)
|
| |
|
| Hybridization protocol |
Illumina BeadStation (Illumina)
|
| Scan protocol |
Illumina BeadStation (Illumina)
|
| Description |
Strain BALB/c
7469653032_E
|
| Data processing |
The raw signal intensities of regular and control probes were extracted from Illumina® GenomeStudio software and used for normexp (Ritchie et al., 2007) background correction followed by quantile normalization using the limma (Smyth and Ritchie, 2011) package. For most of the bioinformatics analysis, we developed several scripts in R statistical language (R Core Team, 2012).
|
| |
|
| Submission date |
Jan 23, 2013 |
| Last update date |
Nov 05, 2013 |
| Contact name |
Hossein Baharvand |
| E-mail(s) |
baharvand@royaninstitute.org
|
| Phone |
+9821-22339936
|
| Organization name |
Royan Institute for Stem Cell Biology and Technology
|
| Street address |
Hafez St., Bani Hashem St.
|
| City |
Tehran |
| ZIP/Postal code |
P.O.Box: 19395-4644 |
| Country |
Iran |
| |
|
| Platform ID |
GPL6887 |
| Series (1) |
| GSE43682 |
Transcriptome of mouse pluripotent embryonic stem cells (mESC) cultured in R2i, 2i, PD and SB conditions |
|
