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Sample GSM1068354 Query DataSets for GSM1068354
Status Public on May 01, 2013
Title db_16 weeks_non-fasted_rep_3 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 16 weeks
fasting status: non-fasted
strain: B6.BKS(D)-Lep rdb/J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 09M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 5968.620833 0
ILMN_2721178 1346.247917 0
ILMN_3033922 922.484375 0
ILMN_3092673 3254.7375 0
ILMN_2816356 123.675 0.00125
ILMN_2808939 121.4458333 0.00125
ILMN_2634564 655.6770833 0
ILMN_2737647 69.884375 0.1391
ILMN_2734484 939.4479167 0
ILMN_2952292 113.4145833 0.00125
ILMN_2699078 51.1375 0.85338
ILMN_1213681 512.7125 0
ILMN_2735413 59.375 0.41479
ILMN_2735415 81.87083333 0.03885
ILMN_2891688 1097.13125 0
ILMN_2637698 546.7104167 0
ILMN_2674228 306.8375 0
ILMN_2601546 78.58958333 0.05639
ILMN_1230831 57.68541667 0.48747
ILMN_2848071 65.58125 0.2218

Total number of rows: 25697

Table truncated, full table size 756 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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