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Sample GSM1068368 Query DataSets for GSM1068368
Status Public on May 01, 2013
Title dt_16 weeks_fasted_rep_2 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 16 weeks
fasting status: fasted
strain: C57BL/6J
diet: D12492
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 23M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 6383.354167 0
ILMN_2721178 1256.452083 0
ILMN_3033922 1050.585417 0
ILMN_3092673 3462.072917 0
ILMN_2816356 105.7875 0.00251
ILMN_2808939 152.1989583 0
ILMN_2634564 585.35625 0
ILMN_2737647 65.75208333 0.18296
ILMN_2734484 1074.889583 0
ILMN_2952292 103.603125 0.00251
ILMN_2699078 48.74791667 0.93358
ILMN_1213681 580.2395833 0
ILMN_2735413 60.40833333 0.35464
ILMN_2735415 67.184375 0.15539
ILMN_2891688 718.184375 0
ILMN_2637698 680.9166667 0
ILMN_2674228 293.5239583 0
ILMN_2601546 62.34583333 0.2807
ILMN_1230831 65.15416667 0.20426
ILMN_2848071 68.05104167 0.15038

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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