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Sample GSM1068373 Query DataSets for GSM1068373
Status Public on May 01, 2013
Title ob_48 weeks_fasted_rep_1 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: fasted
strain: B6.V-Lep ob/J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 28M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3984.785417 0
ILMN_2721178 985.7041667 0
ILMN_3033922 1053.51875 0
ILMN_3092673 3450.3875 0
ILMN_2816356 82.38020833 0.02381
ILMN_2808939 119.7583333 0
ILMN_2634564 508.1833333 0
ILMN_2737647 65.56458333 0.19173
ILMN_2734484 557.9708333 0
ILMN_2952292 95.24791667 0.00376
ILMN_2699078 54.18958333 0.68045
ILMN_1213681 482.4395833 0
ILMN_2735413 77.14479167 0.04637
ILMN_2735415 98.77083333 0.00376
ILMN_2891688 588.584375 0
ILMN_2637698 621.3895833 0
ILMN_2674228 212.9645833 0
ILMN_2601546 73.74166667 0.06266
ILMN_1230831 71.23333333 0.08897
ILMN_2848071 80.39583333 0.03008

Total number of rows: 25697

Table truncated, full table size 749 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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