NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1068380 Query DataSets for GSM1068380
Status Public on May 01, 2013
Title db_48 weeks_fasted_rep_2 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: fasted
strain: B6.BKS(D)-Lep rdb/J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 35M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3598.59375 0
ILMN_2721178 806.4104167 0
ILMN_3033922 848.71875 0
ILMN_3092673 2968.48125 0
ILMN_2816356 102.134375 0
ILMN_2808939 135.7135417 0
ILMN_2634564 571.6895833 0
ILMN_2737647 66.79166667 0.15915
ILMN_2734484 542.8041667 0
ILMN_2952292 92.09583333 0.00251
ILMN_2699078 49.05208333 0.91228
ILMN_1213681 449.234375 0
ILMN_2735413 78.62708333 0.03509
ILMN_2735415 92.69583333 0.00251
ILMN_2891688 701.4541667 0
ILMN_2637698 724.0541667 0
ILMN_2674228 217.3385417 0
ILMN_2601546 70.66041667 0.09023
ILMN_1230831 72.83229167 0.07268
ILMN_2848071 68.84791667 0.11278

Total number of rows: 25697

Table truncated, full table size 745 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap