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Sample GSM1068385 Query DataSets for GSM1068385
Status Public on May 01, 2013
Title kn_48 weeks_fasted_rep_1 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: fasted
strain: C57BL/6J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 40M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4325.522917 0
ILMN_2721178 891.36875 0
ILMN_3033922 800.3541667 0
ILMN_3092673 2301.279167 0
ILMN_2816356 130.1666667 0.00125
ILMN_2808939 119.91875 0.00125
ILMN_2634564 646.3916667 0
ILMN_2737647 68.175 0.14411
ILMN_2734484 621.8395833 0
ILMN_2952292 96.01979167 0.01003
ILMN_2699078 53.65833333 0.74311
ILMN_1213681 639.04375 0
ILMN_2735413 62.72083333 0.28321
ILMN_2735415 76.74375 0.05013
ILMN_2891688 857.1020833 0
ILMN_2637698 613.5416667 0
ILMN_2674228 267.7458333 0
ILMN_2601546 69.09791667 0.12657
ILMN_1230831 69.94479167 0.11905
ILMN_2848071 65.60625 0.2005

Total number of rows: 25697

Table truncated, full table size 757 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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