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Sample GSM1068387 Query DataSets for GSM1068387
Status Public on May 01, 2013
Title kn_48 weeks_fasted_rep_3 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: fasted
strain: C57BL/6J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 42M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4398.6375 0
ILMN_2721178 914.25 0
ILMN_3033922 947.5833333 0
ILMN_3092673 3304.89375 0
ILMN_2816356 105.8041667 0
ILMN_2808939 134.39375 0
ILMN_2634564 473.5375 0
ILMN_2737647 77.82083333 0.04261
ILMN_2734484 681.80625 0
ILMN_2952292 96.94895833 0.00251
ILMN_2699078 50.19583333 0.90226
ILMN_1213681 549.11875 0
ILMN_2735413 64.92916667 0.20802
ILMN_2735415 79.66666667 0.03885
ILMN_2891688 745.2645833 0
ILMN_2637698 538.1677083 0
ILMN_2674228 243.30625 0
ILMN_2601546 67.14479167 0.15915
ILMN_1230831 79.11458333 0.03885
ILMN_2848071 64.38125 0.22306

Total number of rows: 25697

Table truncated, full table size 748 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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