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Sample GSM106997 Query DataSets for GSM106997
Status Public on Mar 05, 2007
Title C57BL/6J bed nucleus of the stria terminalis rep2 (430 2.0 Array)
Sample type RNA
 
Source name bed nucleus of the stria terminalis
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol bed nuclei of the stria terminalis were dissected from three C57BL/6J mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C57BL/6J mouse bed nucleus of the stria terminalis
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 829.99 P 0.003311311
1415671_at 1394.43 P 0.003311311
1415672_at 1208.2 P 0.003311311
1415673_at 116.93 P 0.007585776
1415674_a_at 422.35 P 0.003311311
1415675_at 375.26 P 0.004466836
1415676_a_at 1030.27 P 0.003311311
1415677_at 321.62 P 0.003311311
1415678_at 822.1 P 0.003311311
1415679_at 677.08 P 0.003311311
1415680_at 231.31 P 0.003311311
1415681_at 377.27 P 0.003311311
1415682_at 262.75 P 0.003311311
1415683_at 536.34 P 0.003311311
1415684_at 250.71 P 0.003311311
1415685_at 234.12 P 0.003311311
1415686_at 977.82 P 0.003311311
1415687_a_at 3054.81 P 0.003311311
1415688_at 650.05 P 0.003311311
1415689_s_at 189.57 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary data files not provided

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