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Sample GSM106999 Query DataSets for GSM106999
Status Public on Mar 05, 2007
Title C3H/HeJ bed nucleus of the stria terminalis rep2 (430 2.0 Array)
Sample type RNA
 
Source name bed nucleus of the stria terminalis
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol bed nuclei of the stria terminalis were dissected from three C3H/HeJ mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C3H/HeJ mouse bed nucleus of the stria terminalis
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 920.34 P 0.003311311
1415671_at 1618.55 P 0.003311311
1415672_at 1379.67 P 0.003311311
1415673_at 124.56 P 0.007585776
1415674_a_at 371.65 P 0.004466836
1415675_at 391.44 P 0.004466836
1415676_a_at 1420.91 P 0.003311311
1415677_at 386.24 P 0.003311311
1415678_at 949.67 P 0.003311311
1415679_at 764.94 P 0.003311311
1415680_at 175.69 P 0.003311311
1415681_at 393.62 P 0.003311311
1415682_at 314.99 P 0.003311311
1415683_at 664.69 P 0.003311311
1415684_at 264.37 P 0.003311311
1415685_at 165.96 P 0.003311311
1415686_at 960.9 P 0.003311311
1415687_a_at 3665.08 P 0.003311311
1415688_at 828.47 P 0.003311311
1415689_s_at 166.13 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1372 Kbytes.




Supplementary data files not provided

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