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Sample GSM107013 Query DataSets for GSM107013
Status Public on Mar 05, 2007
Title DBA/2J hippocampus rep1 (430 2.0 Array)
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol Hippocampi were dissected from one DBA/2J mouse under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male DBA/2J mouse hippocampus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 807.24 P 0.003311311
1415671_at 1609.33 P 0.003311311
1415672_at 1324.97 P 0.003311311
1415673_at 188.93 P 0.004466836
1415674_a_at 368.79 P 0.004466836
1415675_at 443.08 P 0.003311311
1415676_a_at 1607.2 P 0.003311311
1415677_at 300.01 P 0.003311311
1415678_at 760.15 P 0.003311311
1415679_at 458.18 P 0.003311311
1415680_at 176.31 P 0.003311311
1415681_at 414.29 P 0.003311311
1415682_at 397.58 P 0.003311311
1415683_at 936.63 P 0.003311311
1415684_at 183.95 P 0.004466836
1415685_at 132.94 P 0.003311311
1415686_at 1143.51 P 0.003311311
1415687_a_at 3448.29 P 0.003311311
1415688_at 695.63 P 0.003311311
1415689_s_at 172.04 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1371 Kbytes.




Supplementary data files not provided
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