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Sample GSM107016 Query DataSets for GSM107016
Status Public on Mar 05, 2007
Title FVB/NJ hippocampus rep2 (430 2.0 Array)
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol Hippocampi were dissected from one FVB/NJ mouse under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male FVB/NJ mouse hippocampus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 723.49 P 0.003311311
1415671_at 1494.62 P 0.003311311
1415672_at 1201.46 P 0.003311311
1415673_at 226.86 P 0.005888437
1415674_a_at 373.87 P 0.004466836
1415675_at 453.22 P 0.004466836
1415676_a_at 1320.32 P 0.003311311
1415677_at 253.14 P 0.003311311
1415678_at 690.42 P 0.003311311
1415679_at 630.4 P 0.003311311
1415680_at 186.51 P 0.004466836
1415681_at 347.08 P 0.003311311
1415682_at 326.9 P 0.003311311
1415683_at 869.64 P 0.003311311
1415684_at 144.29 P 0.01
1415685_at 246.53 P 0.003311311
1415686_at 1051.74 P 0.003311311
1415687_a_at 3168.12 P 0.003311311
1415688_at 822 P 0.003311311
1415689_s_at 180.24 P 0.004466836

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary data files not provided
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