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Sample GSM107019 Query DataSets for GSM107019
Status Public on Mar 05, 2007
Title A/J hypothalamus rep1 (430 2.0 Array)
Sample type RNA
 
Source name hypothalamus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol hypothalami were dissected from two A/J mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male A/J mouse hypothalamus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 895.93 P 0.003311311
1415671_at 1637.5 P 0.003311311
1415672_at 1222.46 P 0.003311311
1415673_at 154.52 P 0.012882496
1415674_a_at 577.47 P 0.003311311
1415675_at 539.14 P 0.003311311
1415676_a_at 1422.91 P 0.003311311
1415677_at 373.37 P 0.003311311
1415678_at 993.42 P 0.003311311
1415679_at 879.35 P 0.003311311
1415680_at 199.23 P 0.004466836
1415681_at 436.94 P 0.003311311
1415682_at 389.64 P 0.003311311
1415683_at 616.25 P 0.003311311
1415684_at 261.59 P 0.003311311
1415685_at 169.57 P 0.003311311
1415686_at 1152.8 P 0.003311311
1415687_a_at 3970.93 P 0.003311311
1415688_at 576.25 P 0.003311311
1415689_s_at 240.9 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1371 Kbytes.




Supplementary data files not provided
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