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Sample GSM107025 Query DataSets for GSM107025
Status Public on Mar 05, 2007
Title DBA/2J hypothalamus rep1 (430 2.0 Array)
Sample type RNA
 
Source name hypothalamus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol hypothalami were dissected from two DBA/2J mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male DBA/2J mouse hypothalamus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 1060 P 0.003311311
1415671_at 1449.17 P 0.003311311
1415672_at 1158.97 P 0.003311311
1415673_at 147.53 P 0.012882496
1415674_a_at 622.96 P 0.003311311
1415675_at 406.75 P 0.004466836
1415676_a_at 1540.51 P 0.003311311
1415677_at 382.24 P 0.003311311
1415678_at 1122.66 P 0.003311311
1415679_at 719.61 P 0.003311311
1415680_at 191.47 P 0.003311311
1415681_at 465.71 P 0.003311311
1415682_at 353.1 P 0.003311311
1415683_at 850.73 P 0.003311311
1415684_at 194.01 P 0.003311311
1415685_at 140.59 P 0.003311311
1415686_at 1016.76 P 0.003311311
1415687_a_at 3817.06 P 0.003311311
1415688_at 497.63 P 0.003311311
1415689_s_at 176.44 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary data files not provided
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