NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM107031 Query DataSets for GSM107031
Status Public on Mar 05, 2007
Title A/J periaqueductal gray rep1 (430 2.0 Array)
Sample type RNA
 
Source name periaqueductal gray
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol periaqueductal gray regions were dissected from two A/J mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male A/J mouse periaqueductal gray
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 1044.53 P 0.003311311
1415671_at 1635.7 P 0.003311311
1415672_at 1346.03 P 0.003311311
1415673_at 110.28 P 0.016218101
1415674_a_at 507.79 P 0.004466836
1415675_at 404.24 P 0.004466836
1415676_a_at 1527.05 P 0.003311311
1415677_at 305.98 P 0.003311311
1415678_at 1103.45 P 0.003311311
1415679_at 821.93 P 0.003311311
1415680_at 221.18 P 0.005888437
1415681_at 449.49 P 0.003311311
1415682_at 363.87 P 0.003311311
1415683_at 633.57 P 0.003311311
1415684_at 251.96 P 0.003311311
1415685_at 127.61 P 0.003311311
1415686_at 1087.95 P 0.003311311
1415687_a_at 3705.2 P 0.003311311
1415688_at 673.93 P 0.003311311
1415689_s_at 229.54 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1372 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap