|
Status |
Public on Dec 09, 2013 |
Title |
Untreated 2hpf embryo RNA expression |
Sample type |
RNA |
|
|
Channel 1 |
Source name |
pooled whole zebrafish embryo 2hpf_untreated
|
Organism |
Danio rerio |
Characteristics |
tissue: whole embryo developmental stage: 2 hr post fertilization treated with: none (untreated)
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol following manufactors specifications
|
Label |
Cy3
|
Label protocol |
Followed Agilent protocol substituting COT DNA with salmon sperm DNA at 10ug/ul
|
|
|
Channel 2 |
Source name |
pooled whole zebrafish embryo 2hpf
|
Organism |
Danio rerio |
Characteristics |
developmental stage: 2 hr post fertilization tissue: whole embryo treated with: none (untreated)
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol following manufactors specifications
|
Label |
Cy5
|
Label protocol |
Followed Agilent protocol substituting COT DNA with salmon sperm DNA at 10ug/ul
|
|
|
|
Hybridization protocol |
Followed Agilent protocol
|
Scan protocol |
Scanned on an Agilent High-Resolution C Scanner or an Axon 4000B. Images were quantified using Agilent Feature Extraction Software.
|
Description |
wt2_v_wt2 WT2h-expression
|
Data processing |
Images were quantified and normalized (Lowess) using Agilent Feature Extraction Software v10.7.1.1. Active genes were filtered from maternal transcripts based on wt2_v_wt2 (control) experiment.
|
|
|
Submission date |
Jan 25, 2013 |
Last update date |
Dec 09, 2013 |
Contact name |
Steven Weicksel |
E-mail(s) |
steven.weicksel@umassmed.edu
|
Organization name |
UMass Medical School
|
Department |
BMP
|
Lab |
Sagerstrom
|
Street address |
55 Lake Ave
|
City |
Worcester |
State/province |
Massachusetts |
ZIP/Postal code |
01605 |
Country |
USA |
|
|
Platform ID |
GPL14664 |
Series (2) |
GSE43756 |
Gene expression at four stages of the developing zebrafish embryo |
GSE43758 |
Identification of nucleosome positions at hox TSSs during zebrafish early embryonic development |
|