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Sample GSM1077469 Query DataSets for GSM1077469
Status Public on Feb 05, 2013
Title COLON APCmin/+/VP16 (CTRL) 4
Sample type RNA
 
Source name Intestinal (colon) Tumor
Organism Mus musculus
Characteristics strain: C57BL/6J-FVBN Mixed Strain
age: 8 months
tissue: Intestinal (colon) Tumor
genotype/variation: APCmin/+/VP16 (control)
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAzol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina® TotalPrepTM RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description COLON APCmin/+/VP16 (CTRL) 4
replicate 1
Data processing The data were normalised using quantile normalization with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <100 in both groups were excluded.
 
Submission date Feb 05, 2013
Last update date Feb 05, 2013
Contact name Antonio Moschetta
Organization name University of Bari & Consorzio Mario Negri Sud
Street address Via Nazionale 8A
City Santa Maria Imbaro
ZIP/Postal code 66030
Country Italy
 
Platform ID GPL6885
Series (2)
GSE44070 Genome-wide analysis of gene expression profile of Intestinal (COLON) Tumors from APCmin/+/VP16LXRa vs APCmin/+/VP16
GSE44073 Liver X Receptors play an antitumoral role in the intestine

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1995.734 0
ILMN_2721178 535.2806 0
ILMN_3033922 846.3146 0
ILMN_3092673 3686.451 0
ILMN_2816356 1.798532 0.4022556
ILMN_2808939 1255.983 0
ILMN_2634564 234.1377 0
ILMN_2737647 -5.791593 0.7593985
ILMN_2734484 284.5569 0
ILMN_2952292 113.4234 0
ILMN_2699078 0.1706854 0.4912281
ILMN_1213681 206.46 0
ILMN_2735413 18.97702 0.03884712
ILMN_2735415 -1.500596 0.5689223
ILMN_2891688 503 0
ILMN_2637698 1136.536 0
ILMN_2674228 188.2867 0
ILMN_2601546 7.553772 0.1954887
ILMN_1230831 -4.648753 0.7155389
ILMN_2848071 9.592177 0.1453634

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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