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Sample GSM1077470 Query DataSets for GSM1077470
Status Public on Feb 05, 2013
Title COLON APCmin/+/VP16LXRa 5
Sample type RNA
 
Source name Intestinal (colon) Tumor
Organism Mus musculus
Characteristics strain: C57BL/6J-FVBN Mixed Strain
age: 8 months
tissue: Intestinal (colon) Tumor
genotype/variation: APCmin/+/VP16LXRa
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAzol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina® TotalPrepTM RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description COLON APCmin/+/VP16LXRa 5
replicate 1
Data processing The data were normalised using quantile normalization with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <100 in both groups were excluded.
 
Submission date Feb 05, 2013
Last update date Feb 05, 2013
Contact name Antonio Moschetta
Organization name University of Bari & Consorzio Mario Negri Sud
Street address Via Nazionale 8A
City Santa Maria Imbaro
ZIP/Postal code 66030
Country Italy
 
Platform ID GPL6885
Series (2)
GSE44070 Genome-wide analysis of gene expression profile of Intestinal (COLON) Tumors from APCmin/+/VP16LXRa vs APCmin/+/VP16
GSE44073 Liver X Receptors play an antitumoral role in the intestine

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1613.592 0
ILMN_2721178 391.1404 0
ILMN_3033922 469.0335 0
ILMN_3092673 3280.305 0
ILMN_2816356 24.59308 0.01002506
ILMN_2808939 847.607 0
ILMN_2634564 403.9557 0
ILMN_2737647 8.41098 0.1390978
ILMN_2734484 262.7709 0
ILMN_2952292 72.5579 0
ILMN_2699078 6.487039 0.1917293
ILMN_1213681 219.983 0
ILMN_2735413 -2.385618 0.5827067
ILMN_2735415 1.348293 0.3997494
ILMN_2891688 1463.429 0
ILMN_2637698 1046.78 0
ILMN_2674228 304.99 0
ILMN_2601546 20.34024 0.01879699
ILMN_1230831 -2.536747 0.5964912
ILMN_2848071 17.57382 0.03383459

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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