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Sample GSM107880 Query DataSets for GSM107880
Status Public on Jun 06, 2006
Title E10.5 craniofacial tissue, first branchial arch: 5_6_MNA-1_e1_le1
Sample type RNA
Source name E10.5 craniofacial tissue, first branchial arch
Organism Mus musculus
Extracted molecule total RNA
Description We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.
Submission date May 04, 2006
Last update date Aug 28, 2018
Contact name Winnie Liang
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
Platform ID GPL1261
Series (1)
GSE4774 ruben-affy-mouse-187820
Reanalyzed by GSE119085

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
AFFX-BioB-5_at 198.58441 P 0.000060
AFFX-BioB-M_at 348.7439 P 0.000044
AFFX-BioB-3_at 218.97556 P 0.000044
AFFX-BioC-5_at 777.44867 P 0.000044
AFFX-BioC-3_at 826.16956 P 0.000044
AFFX-BioDn-5_at 1508.4778 P 0.000044
AFFX-BioDn-3_at 3091.512 P 0.000044
AFFX-CreX-5_at 7376.1616 P 0.000052
AFFX-CreX-3_at 8942.945 P 0.000044
AFFX-DapX-5_at 191.6468 P 0.000070
AFFX-DapX-M_at 341.2591 P 0.000662
AFFX-DapX-3_at 477.93567 P 0.000052
AFFX-LysX-5_at 23.74009 P 0.000390
AFFX-LysX-M_at 38.13121 P 0.000389
AFFX-LysX-3_at 86.0974 P 0.000169
AFFX-PheX-5_at 33.676895 P 0.000581
AFFX-PheX-M_at 53.52553 P 0.000509
AFFX-PheX-3_at 67.367065 P 0.000070
AFFX-ThrX-5_at 45.773544 P 0.004472
AFFX-ThrX-M_at 78.85084 P 0.000095

Total number of rows: 45101

Table truncated, full table size 1414 Kbytes.

Supplementary file Size Download File type/resource
GSM107880.cel.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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