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Sample GSM107881 Query DataSets for GSM107881
Status Public on Jun 06, 2006
Title E10.5 craniofacial tissue, first branchial arch: 5_6_MNA-2_e1_le1
Sample type RNA
 
Source name E10.5 craniofacial tissue, first branchial arch
Organism Mus musculus
Extracted molecule total RNA
 
Description We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.
 
Submission date May 04, 2006
Last update date Aug 28, 2018
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL1261
Series (1)
GSE4774 ruben-affy-mouse-187820
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 240.94391 P 0.000110
AFFX-BioB-M_at 345.0397 P 0.000044
AFFX-BioB-3_at 217.94635 P 0.000044
AFFX-BioC-5_at 794.66876 P 0.000052
AFFX-BioC-3_at 800.3545 P 0.000044
AFFX-BioDn-5_at 1502.4019 P 0.000044
AFFX-BioDn-3_at 2882.2397 P 0.000044
AFFX-CreX-5_at 7109.115 P 0.000052
AFFX-CreX-3_at 10232.044 P 0.000044
AFFX-DapX-5_at 193.28735 P 0.000147
AFFX-DapX-M_at 351.12637 P 0.000081
AFFX-DapX-3_at 474.832 P 0.000052
AFFX-LysX-5_at 21.360125 P 0.009337
AFFX-LysX-M_at 36.47903 P 0.026111
AFFX-LysX-3_at 85.22484 P 0.000297
AFFX-PheX-5_at 43.420326 P 0.002275
AFFX-PheX-M_at 45.023563 P 0.002023
AFFX-PheX-3_at 69.09611 P 0.001101
AFFX-ThrX-5_at 53.061203 P 0.001094
AFFX-ThrX-M_at 83.98937 P 0.000509

Total number of rows: 45101

Table truncated, full table size 1413 Kbytes.




Supplementary file Size Download File type/resource
GSM107881.cel.gz 3.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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