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Sample GSM107882 Query DataSets for GSM107882
Status Public on Jun 06, 2006
Title E10.5 craniofacial tissue, first branchial arch: 5_6_MNA-3_e1_le1
Sample type RNA
Source name E10.5 craniofacial tissue, first branchial arch
Organism Mus musculus
Extracted molecule total RNA
Description We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.
Submission date May 04, 2006
Last update date Aug 28, 2018
Contact name Winnie Liang
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
Platform ID GPL1261
Series (1)
GSE4774 ruben-affy-mouse-187820
Reanalyzed by GSE119085

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
AFFX-BioB-5_at 170.56114 P 0.000110
AFFX-BioB-M_at 256.9245 P 0.000044
AFFX-BioB-3_at 166.00899 P 0.000070
AFFX-BioC-5_at 561.6065 P 0.000044
AFFX-BioC-3_at 624.3737 P 0.000044
AFFX-BioDn-5_at 1173.1305 P 0.000044
AFFX-BioDn-3_at 2429.7502 P 0.000044
AFFX-CreX-5_at 5996.7485 P 0.000044
AFFX-CreX-3_at 7775.6733 P 0.000044
AFFX-DapX-5_at 186.43654 P 0.000070
AFFX-DapX-M_at 327.23407 P 0.000662
AFFX-DapX-3_at 457.67487 P 0.000052
AFFX-LysX-5_at 19.198755 P 0.004481
AFFX-LysX-M_at 52.071186 P 0.000340
AFFX-LysX-3_at 95.93423 P 0.000081
AFFX-PheX-5_at 39.377132 P 0.000225
AFFX-PheX-M_at 40.031296 P 0.001796
AFFX-PheX-3_at 70.70804 P 0.000445
AFFX-ThrX-5_at 61.630196 P 0.000754
AFFX-ThrX-M_at 66.322044 P 0.000070

Total number of rows: 45101

Table truncated, full table size 1414 Kbytes.

Supplementary file Size Download File type/resource
GSM107882.cel.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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