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Sample GSM107883

Query DataSets for GSM107883

Status

Public on Jun 06, 2006

Title

E10.5 craniofacial tissue, first branchial arch: KO_MXA-1_e1_le1

Sample type

RNA

Source name

E10.5 craniofacial tissue, first branchial arch

Organism

Mus musculus

Extracted molecule

total RNA

Description

We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.

Submission date

May 04, 2006

Last update date

Aug 28, 2018

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL1261

Series (1)

GSE4774

ruben-affy-mouse-187820

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	240.1652	P	0.000127
AFFX-BioB-M_at	372.9983	P	0.000044
AFFX-BioB-3_at	235.83435	P	0.000044
AFFX-BioC-5_at	731.4578	P	0.000044
AFFX-BioC-3_at	907.6374	P	0.000052
AFFX-BioDn-5_at	1719.2902	P	0.000044
AFFX-BioDn-3_at	3027.598	P	0.000044
AFFX-CreX-5_at	8063.5005	P	0.000052
AFFX-CreX-3_at	10249.193	P	0.000044
AFFX-DapX-5_at	1726.3842	P	0.000044
AFFX-DapX-M_at	2962.7832	P	0.000052
AFFX-DapX-3_at	3774.1616	P	0.000044
AFFX-LysX-5_at	274.89468	P	0.000044
AFFX-LysX-M_at	340.9634	P	0.000044
AFFX-LysX-3_at	741.5203	P	0.000044
AFFX-PheX-5_at	362.10834	P	0.000052
AFFX-PheX-M_at	515.1667	P	0.000044
AFFX-PheX-3_at	518.8375	P	0.000044
AFFX-ThrX-5_at	423.4418	P	0.000044
AFFX-ThrX-M_at	645.9907	P	0.000044

Total number of rows: 45101

Table truncated, full table size 1413 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM107883.cel.gz	3.2 Mb	(ftp)(http)	CEL