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Sample GSM107884 Query DataSets for GSM107884
Status Public on Jun 06, 2006
Title E10.5 craniofacial tissue, first branchial arch: KO_MXA-2_e1_le1
Sample type RNA
 
Source name E10.5 craniofacial tissue, first branchial arch
Organism Mus musculus
Extracted molecule total RNA
 
Description We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.
 
Submission date May 04, 2006
Last update date Aug 28, 2018
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL1261
Series (1)
GSE4774 ruben-affy-mouse-187820
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 215.53487 P 0.000095
AFFX-BioB-M_at 313.65875 P 0.000044
AFFX-BioB-3_at 217.43997 P 0.000060
AFFX-BioC-5_at 724.2666 P 0.000044
AFFX-BioC-3_at 748.0151 P 0.000044
AFFX-BioDn-5_at 1549.1328 P 0.000044
AFFX-BioDn-3_at 2850.8616 P 0.000044
AFFX-CreX-5_at 7427.3013 P 0.000044
AFFX-CreX-3_at 9371.659 P 0.000044
AFFX-DapX-5_at 1639.2266 P 0.000044
AFFX-DapX-M_at 2719.2493 P 0.000052
AFFX-DapX-3_at 3761.92 P 0.000044
AFFX-LysX-5_at 269.2789 P 0.000044
AFFX-LysX-M_at 329.81717 P 0.000044
AFFX-LysX-3_at 715.1076 P 0.000044
AFFX-PheX-5_at 334.59317 P 0.000044
AFFX-PheX-M_at 477.56543 P 0.000044
AFFX-PheX-3_at 510.50128 P 0.000052
AFFX-ThrX-5_at 361.1503 P 0.000044
AFFX-ThrX-M_at 615.278 P 0.000044

Total number of rows: 45101

Table truncated, full table size 1413 Kbytes.




Supplementary file Size Download File type/resource
GSM107884.cel.gz 3.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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