GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM107885

Query DataSets for GSM107885

Status

Public on Jun 06, 2006

Title

E10.5 craniofacial tissue, first branchial arch: KO_MXA-3_e1_le1

Sample type

RNA

Source name

E10.5 craniofacial tissue, first branchial arch

Organism

Mus musculus

Extracted molecule

total RNA

Description

We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.

Submission date

May 04, 2006

Last update date

Aug 28, 2018

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL1261

Series (1)

GSE4774

ruben-affy-mouse-187820

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	218.69858	P	0.000095
AFFX-BioB-M_at	353.2617	P	0.000044
AFFX-BioB-3_at	198.15396	P	0.000060
AFFX-BioC-5_at	713.14905	P	0.000044
AFFX-BioC-3_at	733.1012	P	0.000044
AFFX-BioDn-5_at	1583.7051	P	0.000044
AFFX-BioDn-3_at	2752.4978	P	0.000044
AFFX-CreX-5_at	7351.817	P	0.000052
AFFX-CreX-3_at	9574.18	P	0.000044
AFFX-DapX-5_at	1711.0712	P	0.000044
AFFX-DapX-M_at	2796.5122	P	0.000052
AFFX-DapX-3_at	3621.398	P	0.000044
AFFX-LysX-5_at	250.80923	P	0.000052
AFFX-LysX-M_at	358.4664	P	0.000044
AFFX-LysX-3_at	710.8198	P	0.000044
AFFX-PheX-5_at	333.06265	P	0.000044
AFFX-PheX-M_at	478.85284	P	0.000044
AFFX-PheX-3_at	491.21603	P	0.000044
AFFX-ThrX-5_at	425.6607	P	0.000044
AFFX-ThrX-M_at	586.3862	P	0.000044

Total number of rows: 45101

Table truncated, full table size 1413 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM107885.cel.gz	3.1 Mb	(ftp)(http)	CEL