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Sample GSM107889 Query DataSets for GSM107889
Status Public on Jun 06, 2006
Title E10.5 craniofacial tissue, first branchial arch: WT_MXA-1_e1_le1
Sample type RNA
Source name E10.5 craniofacial tissue, first branchial arch
Organism Mus musculus
Extracted molecule total RNA
Description We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.
Submission date May 04, 2006
Last update date Aug 28, 2018
Contact name Winnie Liang
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
Platform ID GPL1261
Series (1)
GSE4774 ruben-affy-mouse-187820
Reanalyzed by GSE119085

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
AFFX-BioB-5_at 211.72035 P 0.000110
AFFX-BioB-M_at 323.57483 P 0.000044
AFFX-BioB-3_at 225.24355 P 0.000044
AFFX-BioC-5_at 706.28546 P 0.000044
AFFX-BioC-3_at 832.7135 P 0.000044
AFFX-BioDn-5_at 1613.2957 P 0.000044
AFFX-BioDn-3_at 2856.4946 P 0.000044
AFFX-CreX-5_at 7763.149 P 0.000052
AFFX-CreX-3_at 9043.107 P 0.000044
AFFX-DapX-5_at 195.18423 P 0.000110
AFFX-DapX-M_at 313.15155 P 0.000754
AFFX-DapX-3_at 471.001 P 0.000052
AFFX-LysX-5_at 22.35792 P 0.000340
AFFX-LysX-M_at 30.796684 P 0.028457
AFFX-LysX-3_at 85.75834 P 0.000044
AFFX-PheX-5_at 33.63985 P 0.000224
AFFX-PheX-M_at 46.097744 P 0.000127
AFFX-PheX-3_at 68.77166 P 0.000297
AFFX-ThrX-5_at 44.20695 P 0.000390
AFFX-ThrX-M_at 84.577736 P 0.000081

Total number of rows: 45101

Table truncated, full table size 1414 Kbytes.

Supplementary file Size Download File type/resource
GSM107889.cel.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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