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Sample GSM107894 Query DataSets for GSM107894
Status Public on Jun 06, 2006
Title E10.5 craniofacial tissue, first branchial arch: WT_MXA2-3_e1_le1
Sample type RNA
 
Source name E10.5 craniofacial tissue, first branchial arch
Organism Mus musculus
Extracted molecule total RNA
 
Description We will separately dissect the maxillary and mandibular branches of the E10.5 first branchial arch from wild type, dlx2, dlx1/2 and Dlx5/6 mutants. The tissues wil be flash frozen within 1 min of removal.We have not performed the dissections yet so we dont know how much RNA will be get from each sample, but previous experience suggests that we will need ~10 branchial arches/experiment.
Treatment, type=nucleic_acid_extraction, description=We anticipate using this method as it was recommended by TGEN for small amounts of tissue.
 
Submission date May 04, 2006
Last update date Aug 28, 2018
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL1261
Series (1)
GSE4774 ruben-affy-mouse-187820
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 207.49266 P 0.000754
AFFX-BioB-M_at 278.30606 P 0.000044
AFFX-BioB-3_at 179.79184 P 0.000052
AFFX-BioC-5_at 774.27 P 0.000044
AFFX-BioC-3_at 754.39453 P 0.000044
AFFX-BioDn-5_at 1613.927 P 0.000044
AFFX-BioDn-3_at 2869.369 P 0.000044
AFFX-CreX-5_at 7159.665 P 0.000052
AFFX-CreX-3_at 9394.82 P 0.000044
AFFX-DapX-5_at 1639.3717 P 0.000044
AFFX-DapX-M_at 2789.2185 P 0.000052
AFFX-DapX-3_at 3736.3167 P 0.000044
AFFX-LysX-5_at 270.16843 P 0.000044
AFFX-LysX-M_at 365.9983 P 0.000044
AFFX-LysX-3_at 827.8118 P 0.000044
AFFX-PheX-5_at 348.9389 P 0.000044
AFFX-PheX-M_at 490.62225 P 0.000044
AFFX-PheX-3_at 435.2898 P 0.000044
AFFX-ThrX-5_at 391.0587 P 0.000044
AFFX-ThrX-M_at 609.97986 P 0.000044

Total number of rows: 45101

Table truncated, full table size 1413 Kbytes.




Supplementary file Size Download File type/resource
GSM107894.cel.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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