|
| Status |
Public on May 01, 2013 |
| Title |
HIV-RP-1 |
| Sample type |
RNA |
| |
|
| Source name |
Peripheral blood mononuclear cell
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
disease progression: RP
estimated days after hiv infection: 118
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using Trizol reagent and was further purified using NucleoSpin® RNA clean-up (MACHEREY-NAGEL, Germany) according to the manufacturer's instructions.
|
| Label |
Cy3
|
| Label protocol |
Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
|
| |
|
| Hybridization protocol |
Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.
|
| Scan protocol |
Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
|
| Description |
This sample is from one of the total six HIV rapid disease progressors enrolled in this study.
|
| Data processing |
The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249)
|
| |
|
| Submission date |
Feb 11, 2013 |
| Last update date |
May 01, 2013 |
| Contact name |
zining zhang |
| E-mail(s) |
zi_ning101@hotmail.com
|
| Organization name |
China Medical University
|
| Department |
1st affiliated hospital
|
| Lab |
Center for AIDS Research
|
| Street address |
No 155, Nanjingbei street, Heping District
|
| City |
Shenyang |
| State/province |
Liaoning |
| ZIP/Postal code |
110001 |
| Country |
China |
| |
|
| Platform ID |
GPL16025 |
| Series (1) |
| GSE44216 |
Comparison of transcriptional profiles of PBMCs from HIV-infected rapid progressors and chronic progressors |
|
