NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1080924 Query DataSets for GSM1080924
Status Public on May 01, 2013
Title HIV-CP-1
Sample type RNA
 
Source name Peripheral blood mononuclear cell
Organism Homo sapiens
Characteristics gender: Male
disease progression: CP
estimated days after hiv infection: 105
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol reagent and was further purified using NucleoSpin® RNA clean-up (MACHEREY-NAGEL, Germany) according to the manufacturer's instructions.
Label Cy3
Label protocol Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
 
Hybridization protocol Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.
Scan protocol Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
Description This sample is from one of the total seven HIV chronic disease progressors enrolled in this study.
Data processing The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249)
 
Submission date Feb 11, 2013
Last update date May 01, 2013
Contact name zining zhang
E-mail(s) zi_ning101@hotmail.com
Organization name China Medical University
Department 1st affiliated hospital
Lab Center for AIDS Research
Street address No 155, Nanjingbei street, Heping District
City Shenyang
State/province Liaoning
ZIP/Postal code 110001
Country China
 
Platform ID GPL16025
Series (1)
GSE44216 Comparison of transcriptional profiles of PBMCs from HIV-infected rapid progressors and chronic progressors

Data table header descriptions
ID_REF
VALUE RMA-normalized signal intensity

Data table
ID_REF VALUE
AB000409 9.23686
AB000463 10.4286
AB000781 7.14023
AB001328 3.94502
AB002294 4.82909
AB002308 10.7503
AB002311 11.8223
AB002313 12.0651
AB002360 6.12778
AB002377 7.42102
AB002381 12.1387
AB002382 8.18353
AB002384 12.3029
AB003177 12.8669
AB003333 10.7819
AB006589 4.51212
AB006590 3.98254
AB006621 3.056
AB006625 2.91048
AB007457 12.5205

Total number of rows: 45033

Table truncated, full table size 776 Kbytes.




Supplementary file Size Download File type/resource
GSM1080924_511518A02_2012-04-19_532.pair.gz 2.9 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap