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Sample GSM108310 Query DataSets for GSM108310
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 Rep1
Sample type RNA
 
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Spermatogonial stem cells maintained in the presence of GDNF and GFRalpha1
Extracted molecule total RNA
Label PE
 
Description Spermatogonial stem cells cultured with GDNF, GFRalpha1, and bFGF.
Replicate 1
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice. Cultures were continually maintained in a serum-free, defined media with GDNF, GFRalpha1 and bFGF.
Data processing MAS 5.0, signal intensities scaled to a mean singal of 150
 
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
E-mail(s) jmo15@psu.edu
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
 
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-TrpnX-M_at 3.7 A 0.814869
AFFX-TrpnX-5_at 2.7 A 0.749204
AFFX-TrpnX-3_at 0.8 A 0.712257
AFFX-TransRecMur/X57349_M_at 188.8 P 0.000147
AFFX-TransRecMur/X57349_5_at 246.7 P 0.000147
AFFX-TransRecMur/X57349_3_at 715.9 P 0.000044
AFFX-ThrX-M_at 125.7 P 0.00034
AFFX-ThrX-5_at 86.3 P 0.001248
AFFX-ThrX-3_at 171.8 P 0.000581
AFFX-r2-P1-cre-5_at 8447.1 P 0.000244
AFFX-r2-P1-cre-3_at 11683.5 P 0.000244
AFFX-r2-Ec-bioD-5_at 3927.7 P 0.000244
AFFX-r2-Ec-bioD-3_at 4377.3 P 0.000244
AFFX-r2-Ec-bioC-5_at 793.7 P 0.000244
AFFX-r2-Ec-bioC-3_at 926.1 P 0.000244
AFFX-r2-Ec-bioB-M_at 283 P 0.000244
AFFX-r2-Ec-bioB-5_at 269.4 P 0.000732
AFFX-r2-Ec-bioB-3_at 333.5 P 0.000244
AFFX-r2-Bs-thr-M_s_at 148.3 P 0.010742
AFFX-r2-Bs-thr-5_s_at 152.2 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1197 Kbytes.




Supplementary data files not provided

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