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Sample GSM108311 Query DataSets for GSM108311
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 Rep2
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Spermatogonial stem cells maintained in the presence of GDNF and GFRalpha1.
Replicate 2
Extracted molecule total RNA
Label PE
Description Spermatogonial stem cells cultured with GDNF, GFRalpha1, and bFGF.
Replicate 2
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice. Cultures were continually maintained in a serum-free, defined media with GDNF, GFRalpha1 and bFGF.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 1.5 A 0.883887
AFFX-TrpnX-5_at 2.7 A 0.699394
AFFX-TrpnX-3_at 2.7 A 0.659391
AFFX-TransRecMur/X57349_M_at 78.6 P 0.000662
AFFX-TransRecMur/X57349_5_at 89.5 P 0.003212
AFFX-TransRecMur/X57349_3_at 303 P 0.000052
AFFX-ThrX-M_at 101.4 P 0.000446
AFFX-ThrX-5_at 100.1 P 0.000754
AFFX-ThrX-3_at 202 P 0.000581
AFFX-r2-P1-cre-5_at 14096.9 P 0.000244
AFFX-r2-P1-cre-3_at 18488.2 P 0.000244
AFFX-r2-Ec-bioD-5_at 6598.4 P 0.000244
AFFX-r2-Ec-bioD-3_at 8218.9 P 0.000244
AFFX-r2-Ec-bioC-5_at 1454.6 P 0.000244
AFFX-r2-Ec-bioC-3_at 1671.6 P 0.000244
AFFX-r2-Ec-bioB-M_at 542.5 P 0.000244
AFFX-r2-Ec-bioB-5_at 410.6 P 0.000244
AFFX-r2-Ec-bioB-3_at 645.6 P 0.000244
AFFX-r2-Bs-thr-M_s_at 271.2 P 0.010742
AFFX-r2-Bs-thr-5_s_at 141.4 P 0.000732

Total number of rows: 45101

Table truncated, full table size 1196 Kbytes.

Supplementary data files not provided

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