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Sample GSM108312 Query DataSets for GSM108312
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 Rep3
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Spermatogonial stem cells maintained in the presence of GDNF and GFRalpha1.
Replicate 3
Extracted molecule total RNA
Label PE
Description Spermatogonial stem cells cultured with GDNF, GFRalpha1, and bFGF.
Replicate 3
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice. Cultures were continually maintained in a serum-free, defined media with GDNF, GFRalpha1 and bFGF.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 2.6 A 0.883908
AFFX-TrpnX-5_at 4 A 0.41138
AFFX-TrpnX-3_at 1.5 A 0.631573
AFFX-TransRecMur/X57349_M_at 155.9 P 0.00039
AFFX-TransRecMur/X57349_5_at 197.7 P 0.000662
AFFX-TransRecMur/X57349_3_at 631.7 P 0.000052
AFFX-ThrX-M_at 91 P 0.000225
AFFX-ThrX-5_at 55.6 P 0.00141
AFFX-ThrX-3_at 152.3 P 0.000581
AFFX-r2-P1-cre-5_at 12849.5 P 0.000244
AFFX-r2-P1-cre-3_at 17052.7 P 0.000244
AFFX-r2-Ec-bioD-5_at 6125 P 0.000244
AFFX-r2-Ec-bioD-3_at 7308.4 P 0.000244
AFFX-r2-Ec-bioC-5_at 1259.3 P 0.000244
AFFX-r2-Ec-bioC-3_at 1404.4 P 0.000244
AFFX-r2-Ec-bioB-M_at 515.9 P 0.000244
AFFX-r2-Ec-bioB-5_at 427 P 0.000244
AFFX-r2-Ec-bioB-3_at 545.7 P 0.000244
AFFX-r2-Bs-thr-M_s_at 199 P 0.008057
AFFX-r2-Bs-thr-5_s_at 116 P 0.000732

Total number of rows: 45101

Table truncated, full table size 1196 Kbytes.

Supplementary data files not provided

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