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Sample GSM108313 Query DataSets for GSM108313
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 18-hr withdrawal Rep1
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1.
Replicate 1
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1.
Replicate 1
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 1.9 A 0.876428
AFFX-TrpnX-5_at 4 A 0.5
AFFX-TrpnX-3_at 0.5 A 0.897835
AFFX-TransRecMur/X57349_M_at 65.2 P 0.000581
AFFX-TransRecMur/X57349_5_at 93.2 P 0.002023
AFFX-TransRecMur/X57349_3_at 365.7 P 0.00006
AFFX-ThrX-M_at 124.9 P 0.000169
AFFX-ThrX-5_at 89.2 P 0.00034
AFFX-ThrX-3_at 187.3 P 0.000446
AFFX-r2-P1-cre-5_at 9845.6 P 0.000244
AFFX-r2-P1-cre-3_at 13535.9 P 0.000244
AFFX-r2-Ec-bioD-5_at 4766.5 P 0.000244
AFFX-r2-Ec-bioD-3_at 5579.2 P 0.000244
AFFX-r2-Ec-bioC-5_at 1064.2 P 0.000244
AFFX-r2-Ec-bioC-3_at 1200 P 0.000244
AFFX-r2-Ec-bioB-M_at 417.1 P 0.000244
AFFX-r2-Ec-bioB-5_at 349 P 0.000732
AFFX-r2-Ec-bioB-3_at 474.1 P 0.000244
AFFX-r2-Bs-thr-M_s_at 267.3 P 0.008057
AFFX-r2-Bs-thr-5_s_at 142.8 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.

Supplementary data files not provided

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