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Sample GSM108315 Query DataSets for GSM108315
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 18-hr withdrawal Rep3
Sample type RNA
 
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1.
Replicate 3
Extracted molecule total RNA
Label PE
 
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1.
Replicate 3
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
 
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
E-mail(s) jmo15@psu.edu
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
 
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-TrpnX-M_at 1.4 A 0.966323
AFFX-TrpnX-5_at 3.2 A 0.724854
AFFX-TrpnX-3_at 1.3 A 0.804734
AFFX-TransRecMur/X57349_M_at 13.3 A 0.156732
AFFX-TransRecMur/X57349_5_at 13.4 A 0.250796
AFFX-TransRecMur/X57349_3_at 40.4 P 0.00762
AFFX-ThrX-M_at 103.7 P 0.000972
AFFX-ThrX-5_at 44 P 0.018281
AFFX-ThrX-3_at 339.4 P 0.000195
AFFX-r2-P1-cre-5_at 15581.5 P 0.000244
AFFX-r2-P1-cre-3_at 20438.1 P 0.000244
AFFX-r2-Ec-bioD-5_at 7198.2 P 0.000244
AFFX-r2-Ec-bioD-3_at 8712.9 P 0.000244
AFFX-r2-Ec-bioC-5_at 1547.8 P 0.000244
AFFX-r2-Ec-bioC-3_at 1707.3 P 0.000244
AFFX-r2-Ec-bioB-M_at 604 P 0.000244
AFFX-r2-Ec-bioB-5_at 535.4 P 0.000244
AFFX-r2-Ec-bioB-3_at 686.8 P 0.000244
AFFX-r2-Bs-thr-M_s_at 259.7 P 0.008057
AFFX-r2-Bs-thr-5_s_at 82.8 P 0.001221

Total number of rows: 45101

Table truncated, full table size 1197 Kbytes.




Supplementary data files not provided

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