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Sample GSM108315 Query DataSets for GSM108315
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 18-hr withdrawal Rep3
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1.
Replicate 3
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1.
Replicate 3
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 1.4 A 0.966323
AFFX-TrpnX-5_at 3.2 A 0.724854
AFFX-TrpnX-3_at 1.3 A 0.804734
AFFX-TransRecMur/X57349_M_at 13.3 A 0.156732
AFFX-TransRecMur/X57349_5_at 13.4 A 0.250796
AFFX-TransRecMur/X57349_3_at 40.4 P 0.00762
AFFX-ThrX-M_at 103.7 P 0.000972
AFFX-ThrX-5_at 44 P 0.018281
AFFX-ThrX-3_at 339.4 P 0.000195
AFFX-r2-P1-cre-5_at 15581.5 P 0.000244
AFFX-r2-P1-cre-3_at 20438.1 P 0.000244
AFFX-r2-Ec-bioD-5_at 7198.2 P 0.000244
AFFX-r2-Ec-bioD-3_at 8712.9 P 0.000244
AFFX-r2-Ec-bioC-5_at 1547.8 P 0.000244
AFFX-r2-Ec-bioC-3_at 1707.3 P 0.000244
AFFX-r2-Ec-bioB-M_at 604 P 0.000244
AFFX-r2-Ec-bioB-5_at 535.4 P 0.000244
AFFX-r2-Ec-bioB-3_at 686.8 P 0.000244
AFFX-r2-Bs-thr-M_s_at 259.7 P 0.008057
AFFX-r2-Bs-thr-5_s_at 82.8 P 0.001221

Total number of rows: 45101

Table truncated, full table size 1197 Kbytes.

Supplementary data files not provided

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