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Sample GSM108316 Query DataSets for GSM108316
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 2-hr replacement Rep1
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 2-hr.
Replicate 1
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 2-hr.
Replicate 1
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 1.4 A 0.891102
AFFX-TrpnX-5_at 2.1 A 0.794268
AFFX-TrpnX-3_at 1.8 A 0.544603
AFFX-TransRecMur/X57349_M_at 71.3 P 0.010317
AFFX-TransRecMur/X57349_5_at 73.6 P 0.005565
AFFX-TransRecMur/X57349_3_at 330.9 P 0.000044
AFFX-ThrX-M_at 107.1 P 0.00141
AFFX-ThrX-5_at 74.7 P 0.000857
AFFX-ThrX-3_at 161.7 P 0.000662
AFFX-r2-P1-cre-5_at 13815.9 P 0.000244
AFFX-r2-P1-cre-3_at 18145.7 P 0.000244
AFFX-r2-Ec-bioD-5_at 6086.9 P 0.000244
AFFX-r2-Ec-bioD-3_at 7611.9 P 0.000244
AFFX-r2-Ec-bioC-5_at 1343.7 P 0.000244
AFFX-r2-Ec-bioC-3_at 1504.6 P 0.000244
AFFX-r2-Ec-bioB-M_at 519 P 0.000244
AFFX-r2-Ec-bioB-5_at 418.5 P 0.000244
AFFX-r2-Ec-bioB-3_at 556.4 P 0.000244
AFFX-r2-Bs-thr-M_s_at 190.1 P 0.01416
AFFX-r2-Bs-thr-5_s_at 139.6 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.

Supplementary data files not provided

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