GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM108319 Query DataSets for GSM108319
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 4-hr replacement Rep1
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 4-hr.
Replicate 1
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 4-hr.
Replicate 1
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 4.7 A 0.794268
AFFX-TrpnX-5_at 2 A 0.737173
AFFX-TrpnX-3_at 0.9 A 0.783476
AFFX-TransRecMur/X57349_M_at 128.8 P 0.000225
AFFX-TransRecMur/X57349_5_at 167.6 P 0.000297
AFFX-TransRecMur/X57349_3_at 556.6 P 0.00007
AFFX-ThrX-M_at 132.3 P 0.000147
AFFX-ThrX-5_at 89.4 P 0.001409
AFFX-ThrX-3_at 195.9 P 0.000297
AFFX-r2-P1-cre-5_at 12019.2 P 0.000244
AFFX-r2-P1-cre-3_at 15852.8 P 0.000244
AFFX-r2-Ec-bioD-5_at 5824.3 P 0.000244
AFFX-r2-Ec-bioD-3_at 6926.8 P 0.000244
AFFX-r2-Ec-bioC-5_at 1167.9 P 0.000244
AFFX-r2-Ec-bioC-3_at 1345.4 P 0.000244
AFFX-r2-Ec-bioB-M_at 433.8 P 0.000244
AFFX-r2-Ec-bioB-5_at 387.8 P 0.000244
AFFX-r2-Ec-bioB-3_at 548.3 P 0.000244
AFFX-r2-Bs-thr-M_s_at 226.6 P 0.005859
AFFX-r2-Bs-thr-5_s_at 137.3 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1197 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap