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Sample GSM108320 Query DataSets for GSM108320
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 4-hr replacement Rep2
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 4-hr.
Replicate 2
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 4-hr.
Replicate 2
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 9.5 A 0.686277
AFFX-TrpnX-5_at 12.7 A 0.5
AFFX-TrpnX-3_at 1.3 A 0.645547
AFFX-TransRecMur/X57349_M_at 61.5 P 0.000972
AFFX-TransRecMur/X57349_5_at 96.5 P 0.001102
AFFX-TransRecMur/X57349_3_at 311.5 P 0.000044
AFFX-ThrX-M_at 71.2 P 0.000754
AFFX-ThrX-5_at 38.8 P 0.005565
AFFX-ThrX-3_at 158.3 P 0.000581
AFFX-r2-P1-cre-5_at 11500.7 P 0.000244
AFFX-r2-P1-cre-3_at 15039.5 P 0.000244
AFFX-r2-Ec-bioD-5_at 5984.7 P 0.000244
AFFX-r2-Ec-bioD-3_at 7008.7 P 0.000244
AFFX-r2-Ec-bioC-5_at 1233.5 P 0.000244
AFFX-r2-Ec-bioC-3_at 1376.8 P 0.000244
AFFX-r2-Ec-bioB-M_at 466.9 P 0.000244
AFFX-r2-Ec-bioB-5_at 426.5 P 0.000244
AFFX-r2-Ec-bioB-3_at 516.6 P 0.000244
AFFX-r2-Bs-thr-M_s_at 147.2 P 0.018555
AFFX-r2-Bs-thr-5_s_at 91.5 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1196 Kbytes.

Supplementary data files not provided

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