GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM108321 Query DataSets for GSM108321
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 4-hr replacement Rep3
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 4-hr.
Replicate 3
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 4-hr.
Replicate 3
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 2.7 A 0.749204
AFFX-TrpnX-5_at 11.3 A 0.287743
AFFX-TrpnX-3_at 0.6 A 0.814869
AFFX-TransRecMur/X57349_M_at 33.3 P 0.004484
AFFX-TransRecMur/X57349_5_at 44.5 P 0.009337
AFFX-TransRecMur/X57349_3_at 193.4 P 0.000052
AFFX-ThrX-M_at 57.6 P 0.004998
AFFX-ThrX-5_at 22.6 A 0.147939
AFFX-ThrX-3_at 148.6 P 0.000857
AFFX-r2-P1-cre-5_at 12953.6 P 0.000244
AFFX-r2-P1-cre-3_at 16502.3 P 0.000244
AFFX-r2-Ec-bioD-5_at 6338.4 P 0.000244
AFFX-r2-Ec-bioD-3_at 7259 P 0.000244
AFFX-r2-Ec-bioC-5_at 1488.6 P 0.000244
AFFX-r2-Ec-bioC-3_at 1623.9 P 0.000244
AFFX-r2-Ec-bioB-M_at 610.7 P 0.000244
AFFX-r2-Ec-bioB-5_at 512.3 P 0.000244
AFFX-r2-Ec-bioB-3_at 664.7 P 0.000244
AFFX-r2-Bs-thr-M_s_at 128.5 M 0.056152
AFFX-r2-Bs-thr-5_s_at 80.7 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap