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Sample GSM108324 Query DataSets for GSM108324
Status Public on May 11, 2006
Title SSC GDNF/GFRalpha1 8-hr replacement Rep3
Sample type RNA
Source name Cultured mouse spermatogonial stem cells
Organism Mus musculus
Characteristics Spermatogonial stem cell enriched germ cell cultures established from 6 day old C57BL/6 male mice.
Treatment protocol Established spermatogonial stem cell cultures subjected to an 18-hr withdrawal of GDNF/GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 8-hr.
Replicate 3
Extracted molecule total RNA
Label PE
Description Established cultures of spermatogonial stem cells subjected to an 18-hr withdrawal of GDNF and GFRalpha1 followed by replacement of GDNF/GFRalpha1 for 8-hr.
Replicate 3
Total RNA from spermatogonial stem cell enriched germ cell cultures that were established from 6 day old C57BL/6 male mice.
Data processing MAS 5.0, signal intensities scaled to a mean value of 150
Submission date May 09, 2006
Last update date May 10, 2006
Contact name Jon Oatley
Organization name Pennsylvania State University
Department Dairy and Animal Science
Street address 324 Henning
City University Park
State/province PA
ZIP/Postal code 16802
Country USA
Platform ID GPL1261
Series (1)
GSE4799 GDNF-regulated gene expression in cultured mouse spermatogonial stem cells

Data table header descriptions
VALUE Signal
ABS_CALL Absolute call, present (P), absent (A), marginal (M)
DETECTION P-VALUE Absolute call p-value

Data table
AFFX-TrpnX-M_at 1.3 A 0.9273
AFFX-TrpnX-5_at 19.8 A 0.227636
AFFX-TrpnX-3_at 1.9 A 0.659339
AFFX-TransRecMur/X57349_M_at 104.9 P 0.003212
AFFX-TransRecMur/X57349_5_at 142.4 P 0.001102
AFFX-TransRecMur/X57349_3_at 446.4 P 0.00006
AFFX-ThrX-M_at 129.3 P 0.000972
AFFX-ThrX-5_at 73.5 P 0.002556
AFFX-ThrX-3_at 184.2 P 0.000581
AFFX-r2-P1-cre-5_at 10370.8 P 0.000244
AFFX-r2-P1-cre-3_at 14393.6 P 0.000244
AFFX-r2-Ec-bioD-5_at 4750.7 P 0.000244
AFFX-r2-Ec-bioD-3_at 5340 P 0.000244
AFFX-r2-Ec-bioC-5_at 846 P 0.000244
AFFX-r2-Ec-bioC-3_at 1150.9 P 0.000244
AFFX-r2-Ec-bioB-M_at 353.3 P 0.000244
AFFX-r2-Ec-bioB-5_at 298.7 P 0.000732
AFFX-r2-Ec-bioB-3_at 408 P 0.000244
AFFX-r2-Bs-thr-M_s_at 296.5 P 0.008057
AFFX-r2-Bs-thr-5_s_at 139 P 0.000244

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.

Supplementary data files not provided

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