|
Status |
Public on Oct 20, 2006 |
Title |
stroma_normal_adjacent_sample190_rep2 |
Sample type |
RNA |
|
|
Channel 1 |
Source name |
histologically normal stroma adjacent to I.D.C.
|
Organism |
Homo sapiens |
Characteristics |
LN: Positive ESR: Positive GRADE: III Her2: Negative TT: Normal-Connective PR: Negative AgeOfOperation: 63 TumorSize: 30 MenopauseStatus: Surgical menopause TypeOfCase: Malignant recurrence: No cellularity: LowI
|
Extracted molecule |
total RNA |
Label |
Cy5
|
|
|
Channel 2 |
Source name |
Stratagene universal human reference
|
Organism |
Homo sapiens |
Characteristics |
none
|
Extracted molecule |
total RNA |
Label |
Cy3
|
|
|
|
Description |
RNA isolated from laser capture microdissected breast tissue. RNA has undergone two rounds of T7 linear amplification.
|
Data processing |
Raw Cy5 and Cy3 intensities were background corrected using the RMA background correction algorithm. Data was tranformed to log2 ratios and within array normalization was performed using spatial and intensity-dependent loess. Between array normalization was performed by scaling the arrays to have the same median absolute deviation.
|
|
|
Submission date |
May 12, 2006 |
Last update date |
Jun 13, 2012 |
Contact name |
Greg Finak |
E-mail(s) |
finak@mcb.mcgill.ca
|
Phone |
(514)398-7071 x09317
|
Fax |
514 257-8235
|
URL |
http://www.mcb.mcgill.ca/~finak/
|
Organization name |
McGill University
|
Department |
Mcgill Center For Bioinformatics
|
Lab |
Hallett, M. Park, M.
|
Street address |
3775 University
|
City |
Montreal |
State/province |
QC |
ZIP/Postal code |
H3A2B4 |
Country |
Canada |
|
|
Platform ID |
GPL1708 |
Series (1) |
GSE4823 |
Comparison of normal breast epithelium and stroma from reduction and I.D.C. cases |
|