|
| Status |
Public on Oct 20, 2006 |
| Title |
stroma_normal_adjacent_sample409_rep1 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
histologically normal stroma adjacent to I.D.C.
|
| Organism |
Homo sapiens |
| Characteristics |
LN: Negative
ESR: Positive
GRADE: II
Her2: Negative
TT: Normal-Connective
PR: Negative
AgeOfOperation: 64
TumorSize: 18
MenopauseStatus: Post-menopause
TypeOfCase: Malignant
recurrence: No
cellularity: High
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Stratagene universal human reference
|
| Organism |
Homo sapiens |
| Characteristics |
none
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| |
| Description |
RNA isolated from laser capture microdissected breast tissue. RNA has undergone two rounds of T7 linear amplification.
|
| Data processing |
Raw Cy5 and Cy3 intensities were background corrected using the RMA background
correction algorithm. Data was tranformed to log2 ratios and within array normalization
was performed using spatial and intensity-dependent loess. Between array normalization
was performed by scaling the arrays to have the same median absolute deviation.
|
| |
|
| Submission date |
May 12, 2006 |
| Last update date |
Jun 13, 2012 |
| Contact name |
Greg Finak |
| E-mail(s) |
finak@mcb.mcgill.ca
|
| Phone |
(514)398-7071 x09317
|
| Fax |
514 257-8235
|
| URL |
http://www.mcb.mcgill.ca/~finak/
|
| Organization name |
McGill University
|
| Department |
Mcgill Center For Bioinformatics
|
| Lab |
Hallett, M. Park, M.
|
| Street address |
3775 University
|
| City |
Montreal |
| State/province |
QC |
| ZIP/Postal code |
H3A2B4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL1708 |
| Series (1) |
| GSE4823 |
Comparison of normal breast epithelium and stroma from reduction and I.D.C. cases |
|
