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Sample GSM1090120 Query DataSets for GSM1090120
Status Public on Apr 11, 2013
Title WT1
Sample type RNA
 
Source name fibroadipocyte progenitor
Organism Mus musculus
Characteristics tissue: skeletal muscle
background mouse strain: Balb/cJ
genotype/variation: wild type
treatment: vehicle
Extracted molecule total RNA
Extraction protocol RNA was isolated from plated FAPs using RNeasy purification columns (Qiagen). 25 ug of total RNA was hybridized to Illumina MouseRef-8 v2.0 Expression BeadChip.
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Data processing lumi - vst and quantile normalization
 
Submission date Feb 28, 2013
Last update date Apr 11, 2013
Contact name Rahul C Deo
E-mail(s) rahul.c.deo@gmail.com
Organization name University of California San Francisco
Department Cardiovascular Research Institute
Lab Deo
Street address 555 Mission Bay Blvd. South
City SAN FRANCISCO
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6885
Series (1)
GSE44933 Type 2 innate signals regulate functionality of fibro/adipogenic progenitors to facilitate muscle regeneration

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1248788 7.76491603844047 91.57941 13.990510494327 0.9686717 27
ILMN_2707227 7.87709580708801 114.3187 33.6769758018086 0.03759398 41
ILMN_2896528 11.5458508649179 3514.426 713.408249005 0 38
ILMN_2721178 9.61897723128801 835.392 299.428197664744 0 52
ILMN_1227723 8.69920573165904 357.2146 124.31932941175 0 43
ILMN_3033922 10.8377035652983 2110.499 868.72353133779 0 44
ILMN_3092673 12.9086735159995 8541.147 2108.57538674148 0 44
ILMN_2730714 11.7000129282229 3925.728 1300.82281082878 0 48
ILMN_3162224 10.6368989056043 1827.74 527.388487929947 0 38
ILMN_2816356 7.79356180888871 97.18822 21.5336604478653 0.7218045 38
ILMN_2808939 10.12785010871 1251.884 448.69471800957 0 35
ILMN_2634564 8.3591756555504 238.8617 91.3673448485995 0 29
ILMN_1216623 8.39564913846275 250.0506 111.878044432859 0 47
ILMN_1215157 9.10923244843762 538.7545 222.091521980196 0 48
ILMN_1228777 7.81415448196183 101.3235 18.5603046688452 0.3947369 38
ILMN_2737647 7.78759535319134 95.9709 16.4453339795388 0.7957394 27
ILMN_1216425 7.82382396231276 103.2904 21.1096711306801 0.2681704 47
ILMN_2734484 8.42771349062771 259.3679 120.431863628141 0 42
ILMN_2652961 7.77141453621344 92.85384 13.5966112468791 0.9310777 40
ILMN_2952292 8.03914392984373 152.1146 45.6266872856665 0 60

Total number of rows: 25697

Table truncated, full table size 1649 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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