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Sample GSM1090126 Query DataSets for GSM1090126
Status Public on Apr 11, 2013
Title WT7 + IL4
Sample type RNA
 
Source name fibroadipocyte progenitor
Organism Mus musculus
Characteristics tissue: skeletal muscle
background mouse strain: Balb/cJ
genotype/variation: wild type
treatment: recombinant IL4
Extracted molecule total RNA
Extraction protocol RNA was isolated from plated FAPs using RNeasy purification columns (Qiagen). 25 ug of total RNA was hybridized to Illumina MouseRef-8 v2.0 Expression BeadChip.
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Data processing lumi - vst and quantile normalization
 
Submission date Feb 28, 2013
Last update date Apr 11, 2013
Contact name Rahul C Deo
E-mail(s) rahul.c.deo@gmail.com
Organization name University of California San Francisco
Department Cardiovascular Research Institute
Lab Deo
Street address 555 Mission Bay Blvd. South
City SAN FRANCISCO
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6885
Series (1)
GSE44933 Type 2 innate signals regulate functionality of fibro/adipogenic progenitors to facilitate muscle regeneration

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1248788 7.80603054360522 106.2848 28.2464622102449 0.4949875 26
ILMN_2707227 7.85066122673544 117.7526 27.8660508735316 0.0802005 42
ILMN_2896528 11.0466275692655 3064.119 639.33163442836 0 55
ILMN_2721178 9.2770498912842 787.387 257.339515520187 0 45
ILMN_1227723 8.65176247564981 421.683 150.16043 0 49
ILMN_3033922 10.6627676899248 2329.339 840.776302211664 0 42
ILMN_3092673 12.7814699114008 9122.844 1703.37199121801 0 58
ILMN_2730714 11.6949895160638 4733.298 1298.2847613505 0 37
ILMN_3162224 10.8260461292929 2596.433 511.346870968007 0 32
ILMN_2816356 7.85768441945911 119.7027 33.9210630478459 0.05639098 24
ILMN_2808939 10.5038772927084 2096.338 706.8006 0 36
ILMN_2634564 8.37179239118215 297.463 150.361290993412 0 24
ILMN_1216623 8.37628922086934 298.9264 121.926029471151 0 39
ILMN_1215157 9.01512942556176 618.0233 221.12166 0 36
ILMN_1228777 7.76842488859706 97.42992 19.4165809970346 0.9548872 45
ILMN_2737647 7.8558951763726 119.2116 36.2068579912957 0.06265664 28
ILMN_1216425 7.79054881433851 102.4762 22.4638579005545 0.7330827 44
ILMN_2734484 8.33059265834766 281.279 104.633015075958 0 33
ILMN_2652961 7.77667236634203 99.23189 20.7653106739884 0.8922306 42
ILMN_2952292 8.01737022335526 169.0813 49.4517972750675 0 39

Total number of rows: 25697

Table truncated, full table size 1642 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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