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Sample GSM109333 Query DataSets for GSM109333
Status Public on Nov 01, 2007
Title Q188Rfibroblasts_hexosefree_2days_rep2
Sample type RNA
 
Channel 1
Source name 1703GALT
Organism Homo sapiens
Characteristics Repository # GM01703
Gender: Male
Age: 9 month
Tissue: human fibroblasts
Gene Affected: Galactose-1-phosphate uridyltransferase (GALT)
Mutation: Q188R
Biomaterial provider http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM01703
Extracted molecule total RNA
Extraction protocol not provided by submitter
Label Cy5
Label protocol not provided by submitter
 
Channel 2
Source name 1703GFP
Organism Homo sapiens
Characteristics Repository # GM01703
Gender: Male
Age: 9 month
Tissue: human fibroblasts
Gene Affected: Galactose-1-phosphate uridyltransferase (GALT)
Mutation: Q188R
Biomaterial provider http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM01703
Extracted molecule total RNA
Extraction protocol not provided by submitter
Label Cy3
Label protocol not provided by submitter
 
 
Hybridization protocol not provided by submitter
Scan protocol not provided by submitter
Description Cells were infected with lentiviral vector containing either GALT or GFP, barcode 251239125774
Data processing Data was normalized globally across the whole array (ratio) and locally (loess)
 
Submission date May 18, 2006
Last update date May 13, 2008
Contact name Kent Lai
E-mail(s) klai@med.miami.edu
Organization name University of Miami
Department Pediatrics
Street address P.O. Box 016820
City Miami
State/province FL
ZIP/Postal code 33101
Country USA
 
Platform ID GPL1708
Series (1)
GSE4864 Novel mechanisms of galactose toxicity in human galactose-1-phosphate uridyltransferase (GALT)-deficient cells

Data table header descriptions
ID_REF
VALUE Normalized Log Ratio (635/532)
F635_MEDIAN Signal intensity of red channel
B635_MEDIAN Background intensity of red channel
F532_MEDIAN Signal intensity of green channel
B532_MEDIAN Background intensity of green channel

Data table
ID_REF VALUE F635_MEDIAN B635_MEDIAN F532_MEDIAN B532_MEDIAN
3 0.003 223.247 48.131 213.853 43.942
4 0.314 362.521 50.179 287.09 43.942
5 0.016 169.996 48.131 161.122 42.966
6 0.053 91.142 49.155 87.885 43.942
8 0.626 87.046 51.203 76.167 48.825
9 0.431 105.479 48.131 89.838 44.919
10 0.3 153.611 53.252 125.968 44.919
12 0.047 479.265 49.155 443.329 42.966
13 -0.065 78.853 50.179 78.12 42.966
15 0.241 76.805 48.131 73.237 43.942
16 48.131 49.155 50.778 43.942
17 0.199 614.442 50.179 513.637 42.966
18 0.215 161.803 49.155 138.662 42.966
19 -0.261 687.151 48.131 773.385 44.919
22 0.392 89.094 49.155 78.12 43.942
24 0.169 363.545 51.203 311.502 42.966
25 -0.067 524.324 48.131 522.425 43.942
26 0.324 153.611 50.179 126.944 44.919
27 0.309 322.582 49.155 258.771 44.919
29 0.225 89.094 50.179 83.002 45.895

Total number of rows: 41058

Table truncated, full table size 1670 Kbytes.




Supplementary data files not provided

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