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Sample GSM109336 Query DataSets for GSM109336
Status Public on Nov 01, 2007
Title Q188Rfibroblasts_galactose_2days_rep2
Sample type RNA
 
Channel 1
Source name 1703GALT
Organism Homo sapiens
Characteristics Repository # GM01703
Gender: Male
Age: 9 month
Tissue: human fibroblasts
Gene Affected: Galactose-1-phosphate uridyltransferase (GALT)
Mutation: Q188R
Biomaterial provider http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM01703
Extracted molecule total RNA
Extraction protocol not provided by submitter
Label Cy5
Label protocol not provided by submitter
 
Channel 2
Source name 1703GFP
Organism Homo sapiens
Characteristics Repository # GM01703
Gender: Male
Age: 9 month
Tissue: human fibroblasts
Gene Affected: Galactose-1-phosphate uridyltransferase (GALT)
Mutation: Q188R
Biomaterial provider http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM01703
Extracted molecule total RNA
Extraction protocol not provided by submitter
Label Cy3
Label protocol not provided by submitter
 
 
Hybridization protocol not provided by submitter
Scan protocol not provided by submitter
Description Cells were infected with lentiviral vector containing either GALT or GFP, barcode 251239127247
Data processing Data was normalized globally across the whole array (ratio) and locally (loess)
 
Submission date May 18, 2006
Last update date May 13, 2008
Contact name Kent Lai
E-mail(s) klai@med.miami.edu
Organization name University of Miami
Department Pediatrics
Street address P.O. Box 016820
City Miami
State/province FL
ZIP/Postal code 33101
Country USA
 
Platform ID GPL1708
Series (1)
GSE4864 Novel mechanisms of galactose toxicity in human galactose-1-phosphate uridyltransferase (GALT)-deficient cells

Data table header descriptions
ID_REF
VALUE Normalized Log Ratio (635/532)
F635_MEDIAN Signal intensity of red channel
B635_MEDIAN Background intensity of red channel
F532_MEDIAN Signal intensity of green channel
B532_MEDIAN Background intensity of green channel

Data table
ID_REF VALUE F635_MEDIAN B635_MEDIAN F532_MEDIAN B532_MEDIAN
3 0.401 180.877 38.685 135.816 30.606
4 0.658 409.849 38.685 256.329 30.606
5 0.679 166.24 38.685 109.035 30.606
6 -0.351 60.641 38.685 61.213 30.606
8 0.375 77.369 39.73 62.169 31.563
9 0.414 63.778 38.685 52.605 31.563
10 0.35 124.418 38.685 98.514 31.563
12 -0.004 343.98 39.73 324.237 31.563
13 0.102 60.641 38.685 54.518 31.563
15 -0.677 57.504 39.73 62.169 30.606
16 -0.581 51.231 39.73 51.648 30.606
17 0.316 303.205 38.685 237.2 32.519
18 0.13 131.737 39.73 115.73 32.519
19 -0.314 416.122 39.73 478.225 31.563
22 0.278 69.005 37.639 59.3 31.563
24 0.371 309.478 39.73 232.417 31.563
25 -0.366 247.791 39.73 288.848 30.606
26 0.662 212.243 39.73 136.772 30.606
27 -0.112 179.832 37.639 180.769 31.563
29 0.692 77.369 39.73 55.474 30.606

Total number of rows: 41058

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided

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