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Sample GSM1093605 Query DataSets for GSM1093605
Status Public on Jan 21, 2014
Title LW3
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics strain: C57BL/6J
gender: males
age: 29wks
treatment: female mice on low-fat control diet before and during gestation and lactation and male offspring exposed to post-weaning western diet
Treatment protocol After 6 wks mice were mated , male offspring where assigned to W or L feeding for 24 wks , generating the 4 exp. Groups WW,WL,LL,LW
Growth protocol 5 wk old female mouse were randomly assigned to western diet (W) or low fat control diet(L) ,
Extracted molecule total RNA
Extraction protocol RNA was extracted with TriReagent ( Sigma). Quality control was performed with Biorad Experion RQI analyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit ( Applied Biosystems)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description X5511133049_B
L=low-fat control diet , W=western type diet
Data processing Batcom ( pmid:16632515) and Quantile normalization with MADMAX pipeline ( pmid : 21778530)
 
Submission date Mar 05, 2013
Last update date Jan 21, 2014
Contact name vincent bloks
Organization name UMCG
Department Pediatrics
Lab Pediatrics
Street address Hanzeplein1
City Groningen
ZIP/Postal code 9713GZ
Country Netherlands
 
Platform ID GPL6887
Series (1)
GSE44901 Maternal western diet primes susceptibility to hepatic inflamation in adult male mouse offspring

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2417611 1069.623549
ILMN_2762289 245.6495213
ILMN_2896528 1795.698767
ILMN_2721178 831.863913
ILMN_2458837 240.4197071
ILMN_3033922 1284.495468
ILMN_3092673 4769.43019
ILMN_1230777 2846.439006
ILMN_1246069 2075.644527
ILMN_1232042 239.2573473
ILMN_1243193 576.5491426
ILMN_2524361 241.7342962
ILMN_1242440 242.3493248
ILMN_1233188 253.3198534
ILMN_2543688 354.4062356
ILMN_1259789 254.7766226
ILMN_2816356 244.9979393
ILMN_1224596 242.7470746
ILMN_1233643 244.0317143
ILMN_2808939 674.1355171

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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