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Sample GSM1094507 Query DataSets for GSM1094507
Status Public on Mar 09, 2013
Title Jak2VF Interferon (7991003040_H)
Sample type RNA
 
Source name HSC
Organism Mus musculus
Characteristics background mouse strain: C57B16
genotype: Jak2VF
treatment: Interferon
Treatment protocol Interferon 10,000 units per day for 4 weeks or vehicle control
Growth protocol In vivo isolation
Extracted molecule total RNA
Extraction protocol Invitrogen PicoPure extraction kit
Label Biotin
Label protocol Illumina® TotalPrep™ RNA Amplification Kit according to protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Jak2VF Interferon
Data processing Gene Pattern (Broad Institute) software, Illumina module, Quantile normalization
 
Submission date Mar 07, 2013
Last update date Mar 11, 2013
Contact name Steven Lane
Organization name QIMR
Street address 300 Herston Rd
City Brisbane
ZIP/Postal code 4064
Country Australia
 
Platform ID GPL6885
Series (1)
GSE44961 Depletion of Jak2V617F MPN-propagating stem cells by interferon-alpha in a murine model of polycythemia vera

Data table header descriptions
ID_REF
VALUE average intensities
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2778.383 0
ILMN_2721178 755.0045 0
ILMN_3033922 593.8474 0
ILMN_3092673 1995.994 0
ILMN_2816356 186.0348 0
ILMN_2808939 1379.136 0
ILMN_2634564 673.5137 0
ILMN_2737647 109.2346 0.235589
ILMN_2734484 759.0518 0
ILMN_2952292 242.0427 0
ILMN_2699078 100.2244 0.5388471
ILMN_1213681 535.6983 0
ILMN_2735413 103.8103 0.4110276
ILMN_2735415 91.32195 0.8684211
ILMN_2891688 891.658 0
ILMN_2637698 731.3917 0
ILMN_2674228 769.6528 0
ILMN_2601546 117.1568 0.09273183
ILMN_1230831 94.24982 0.7807018
ILMN_2848071 141.0156 0.006265664

Total number of rows: 25697

Table truncated, full table size 724 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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