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Sample GSM1095655 Query DataSets for GSM1095655
Status Public on Jun 05, 2013
Title WT CCL4 rep 1
Sample type RNA
Source name WT CCL4
Organism Mus musculus
Characteristics strain: Balb/c
genotype/variation: wild-type
age: 2 months
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification kit (Ambion) for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised with Rank Invariant method
Submission date Mar 11, 2013
Last update date Jun 05, 2013
Contact name Sharon Goh
Organization name UCSF
Street address 555 Mission Bay Blvd South
City San Francisco
State/province California
ZIP/Postal code 94158
Country USA
Platform ID GPL6885
Series (1)
GSE45002 Genome-wide analysis of gene expression of livers of wild type and IL-4/IL-13-/- mice after carbon tetrachloride-induced injury

Data table header descriptions
VALUE Rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 -13.30251 0.8220552
ILMN_2707227 2478.147 0
ILMN_2896528 1895.358 0
ILMN_2721178 256.2032 0
ILMN_1227723 398.0424 0
ILMN_3033922 540.1057 0
ILMN_3092673 4436.336 0
ILMN_2730714 5112.309 0
ILMN_3162224 1152.757 0
ILMN_2816356 19.65029 0.1253133
ILMN_2808939 1385.911 0
ILMN_2634564 327.8528 0
ILMN_1216623 394.1571 0
ILMN_1215157 470.9615 0
ILMN_1228777 -3.888699 0.4824561
ILMN_2737647 9.638889 0.2092732
ILMN_1216425 3.02589 0.3182957
ILMN_2734484 886.034 0
ILMN_2652961 15.48413 0.1503759
ILMN_2952292 52.39227 0.01629073

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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