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Sample GSM1095656 Query DataSets for GSM1095656
Status Public on Jun 05, 2013
Title WT CCL4 rep 2
Sample type RNA
 
Source name WT CCL4
Organism Mus musculus
Characteristics strain: Balb/c
genotype/variation: wild-type
age: 2 months
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification kit (Ambion) for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised with Rank Invariant method
 
Submission date Mar 11, 2013
Last update date Jun 05, 2013
Contact name Sharon Goh
E-mail(s) ypg@stanford.edu
Organization name UCSF
Street address 555 Mission Bay Blvd South
City San Francisco
State/province California
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6885
Series (1)
GSE45002 Genome-wide analysis of gene expression of livers of wild type and IL-4/IL-13-/- mice after carbon tetrachloride-induced injury

Data table header descriptions
ID_REF
VALUE Rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 -1.719317 0.4448622
ILMN_2707227 3824.242 0
ILMN_2896528 1606.768 0
ILMN_2721178 289.4703 0
ILMN_1227723 321.4883 0
ILMN_3033922 549.1411 0
ILMN_3092673 3359.998 0
ILMN_2730714 4135.902 0
ILMN_3162224 952.3238 0
ILMN_2816356 13.48765 0.1390978
ILMN_2808939 859.7416 0
ILMN_2634564 287.3296 0
ILMN_1216623 388.6933 0
ILMN_1215157 428.8314 0
ILMN_1228777 -1.047713 0.4273183
ILMN_2737647 12.65411 0.1428571
ILMN_1216425 -0.06420793 0.4022556
ILMN_2734484 1076.304 0
ILMN_2652961 4.337609 0.2907268
ILMN_2952292 52.14975 0.005012531

Total number of rows: 25697

Table truncated, full table size 744 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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