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Sample GSM109814 Query DataSets for GSM109814
Status Public on May 24, 2006
Title endometrium 598
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Proliferative phase PE
Age: 33 Diagnostics: Leiomyomata (TAH)
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 600.9071 0.35287213
1053_at 127.207 0.29576808
117_at 55.024532 0.53995866
121_at 1054.6932 0.30480182
1255_g_at 13.9720745 0.9801763
1294_at 131.32774 0.47019342
1316_at 88.774055 0.9864622
1320_at 49.052185 0.8379883
1405_i_at 107.22625 0.2636975
1431_at 23.118057 0.65714103
1438_at 200.06926 0.2220169
1487_at 136.45268 0.45586437
1494_f_at 101.71029 0.87385225
1598_g_at 983.0409 0.99476594
160020_at 614.2439 0.7802113
1729_at 191.66238 0.44125593
1773_at 63.737843 0.84385806
177_at 31.726927 0.6966211
179_at 458.36224 0.74958473
1861_at 113.12972 0.6248301

Total number of rows: 54675

Table truncated, full table size 1651 Kbytes.




Supplementary file Size Download File type/resource
GSM109814_598.CEL.gz 8.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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