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Sample GSM109815 Query DataSets for GSM109815
Status Public on May 24, 2006
Title endometrium M165
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Proliferative phase PE
Age: 31 Diagnostics: Pipelle endometrial biopsy-nml volunteer Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 922.80493 0.77913254
1053_at 127.251465 0.33067226
117_at 72.074715 0.8248692
121_at 1230.775 0.3528662
1255_g_at 14.527696 0.8782943
1294_at 186.6039 0.78684837
1316_at 106.17697 0.5212658
1320_at 57.922386 0.6737272
1405_i_at 71.343864 0.75955606
1431_at 18.520237 0.7006215
1438_at 207.90266 0.22021946
1487_at 169.98169 0.7892638
1494_f_at 122.854454 0.5818354
1598_g_at 1162.2445 0.5342439
160020_at 998.6649 0.14360707
1729_at 233.6466 0.70349467
1773_at 88.094765 0.2483343
177_at 38.407352 0.7695317
179_at 644.8969 0.37710786
1861_at 94.53303 0.8122906

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109815_M165.CEL.gz 8.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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