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Sample GSM109816 Query DataSets for GSM109816
Status Public on May 24, 2006
Title endometrium M169
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Proliferative phase PE
Age: 32 Diagnostics: Pipelle endometrial biopsy-nml volunteer Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1000.6397 0.91039777
1053_at 104.122826 0.7414908
117_at 72.97607 0.76801705
121_at 1201.1686 0.5020146
1255_g_at 16.4043 0.5980031
1294_at 236.21573 0.39293158
1316_at 117.57484 0.43317428
1320_at 53.357857 0.85271
1405_i_at 49.343784 0.5733929
1431_at 24.229982 0.6253834
1438_at 272.64264 0.15271361
1487_at 219.6894 0.57203054
1494_f_at 130.71448 0.52578217
1598_g_at 1978.7223 0.1446972
160020_at 1340.1128 0.10614207
1729_at 236.30124 0.9016691
1773_at 82.570694 0.3993523
177_at 41.39627 0.6170572
179_at 840.0219 0.22323714
1861_at 100.79032 0.9150204

Total number of rows: 54675

Table truncated, full table size 1651 Kbytes.




Supplementary file Size Download File type/resource
GSM109816_M169.CEL.gz 7.8 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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